| Pos | Team | Pld | W | D | L | +/- | Pts | Form |
|---|---|---|---|---|---|---|---|---|
| 1 |  Osnabrück | 32 | 19 | 7 | 6 | 27 | 64 | WWWWL |
| 2 |  Rot-Weiss Essen | 33 | 18 | 10 | 5 | 18 | 64 | WWWWW |
| 3 |  Energie Cottbus | 32 | 17 | 9 | 6 | 17 | 60 | DLDWW |
| 4 |  MSV Duisburg | 33 | 17 | 9 | 7 | 16 | 60 | LWLWW |
| 5 |  Hansa Rostock | 33 | 16 | 11 | 6 | 25 | 59 | WWLWW |
| 6 |  Verl | 32 | 15 | 9 | 8 | 27 | 54 | WWWLL |
| 7 |  Alemannia Aachen | 33 | 15 | 6 | 12 | 7 | 51 | WWWDW |
| 8 |  1860 München | 32 | 14 | 8 | 10 | 4 | 50 | WDLDL |
| 9 |  Wehen Wiesbaden | 33 | 14 | 6 | 13 | 2 | 48 | DLLLL |
| 10 |  Viktoria Köln | 33 | 14 | 5 | 14 | 3 | 47 | LLWWW |
| 11 |  Waldhof Mannheim | 33 | 14 | 5 | 14 | -8 | 47 | LWDDL |
| 12 |  Jahn Regensburg | 32 | 12 | 6 | 14 | -4 | 42 | LDWLW |
| 13 |  Stuttgart II | 33 | 12 | 6 | 15 | -13 | 42 | WLWDL |
| 14 |  Ingolstadt 04 | 33 | 10 | 10 | 13 | 4 | 40 | WLLLL |
| 15 |  1899 Hoffenheim II | 33 | 11 | 7 | 15 | 1 | 40 | LLWDD |
| 16 |  Saarbrücken | 33 | 8 | 13 | 12 | -7 | 37 | DLWDL |
| 17 |  Havelse | 33 | 7 | 8 | 18 | -24 | 29 | WLLWW |
| 18 |  Ulm 1846 | 33 | 8 | 5 | 20 | -26 | 29 | LDWDL |
| 19 |  Erzgebirge Aue | 32 | 5 | 9 | 18 | -23 | 24 | LLLLL |
| 20 |  Schweinfurt | 33 | 5 | 3 | 25 | -46 | 18 | LWLLD |
Germany