| Pos | Team | Pld | W | D | L | +/- | Pts | Form |
|---|---|---|---|---|---|---|---|---|
| 1 |  Osnabrück | 31 | 19 | 7 | 5 | 28 | 64 | WWWWW |
| 2 |  Rot-Weiss Essen | 31 | 16 | 10 | 5 | 13 | 58 | WWWWW |
| 3 |  Energie Cottbus | 31 | 16 | 9 | 6 | 14 | 57 | WDLDW |
| 4 |  Verl | 30 | 15 | 9 | 6 | 29 | 54 | DLWWW |
| 5 |  MSV Duisburg | 31 | 15 | 9 | 7 | 12 | 54 | DWLWL |
| 6 |  Hansa Rostock | 31 | 14 | 11 | 6 | 20 | 53 | WDWWL |
| 7 |  1860 München | 31 | 14 | 8 | 9 | 7 | 50 | WWDLD |
| 8 |  Wehen Wiesbaden | 30 | 14 | 6 | 10 | 9 | 48 | WLWDL |
| 9 |  Waldhof Mannheim | 31 | 14 | 4 | 13 | -5 | 46 | LWLWD |
| 10 |  Alemannia Aachen | 30 | 13 | 5 | 12 | 2 | 44 | LWWWW |
| 11 |  Viktoria Köln | 31 | 12 | 5 | 14 | 1 | 41 | LLLLW |
| 12 |  Stuttgart II | 31 | 12 | 5 | 14 | -11 | 41 | LLWLW |
| 13 |  Ingolstadt 04 | 30 | 10 | 10 | 10 | 9 | 40 | LDLWL |
| 14 |  Jahn Regensburg | 31 | 11 | 6 | 14 | -5 | 39 | WLDWL |
| 15 |  1899 Hoffenheim II | 31 | 11 | 5 | 15 | 1 | 38 | WLLLW |
| 16 |  Saarbrücken | 30 | 7 | 12 | 11 | -6 | 33 | DWLDL |
| 17 |  Ulm 1846 | 30 | 7 | 4 | 19 | -23 | 25 | DLLLD |
| 18 |  Erzgebirge Aue | 31 | 5 | 9 | 17 | -22 | 24 | LLLLL |
| 19 |  Havelse | 31 | 5 | 8 | 18 | -29 | 23 | LLWLL |
| 20 |  Schweinfurt | 31 | 5 | 2 | 24 | -44 | 17 | LWLWL |